Ok, taking the best answers from above I tackled the cab roof

and proceeded to produce copious amounts of plastic swarf and general mess, this Atlas plastic is horrible and seems to have a nylon content in it.
Anyway, after much sweating, mess and general shouting the roof was filed to the new shape
It didn't actually break through the crown which was a nice result, however as the top thinned it began to flex and deflect away from the file more than the thicker surrounds, so it took some care to get a uniform curvature, but get there it did. I also had to loose the sun shade moulding on the cab sides, they were pretty chunky anyway so not great loss.
With number board temporarily placed back in.
Perfect height and shape now.
Next step was the brass roof overlay, loosing the sun shade moulding was a double benefit and the choice to take it off was two fold, it was too chunky and was being damaged whilst filing close to the cab edge, it's removal therefore forced me to think of an alternative later on, until I decided to add it as a fold down to the roof skin, now the roof is attached on two planes, the roof and two fingers that form the sun shade fitting.
There are very small lips either side that very slightly overhang the cab sides, not easily seen in the above, but when fitted
....can be seen overhanging the cab side front and rear of the sun shade fitting. They do need trimming a little before fnal fixing, but for a first pass everything is as planned.
Initially I was going to use some scrap L brass but suddenly remembered I had etched some sun shade rails for the EMD Spartan cab project and not used them, a quick rummage in that project box revealed two rails which were duly soldered on. I also had to loose the 'extra' flag holders, not an issue as many locos seem to be having these removed, usually when the side windows are plated over, but rule #1 applies here and I've taken them off anyway and kept the side windows.
The roof is only held on (gripped) by the sun shade fitting 'fingers' at the moment but hopefully some 460 on the roof and on these fingers will hold it all securely without the need to add additional mechanical fixings mentioned earlier, it's quite a tight grip even without adhesive and although it looks on the wonk above is quite square, the wonk being a bright highlight just noticed when uploading the image
The number board has slipped down a bit in this photo but does fit up under the roof and the small gap will go once the roof is pressed down and glued, as will the gash in the rear wall from the razor saw
Also in the Spartan cab project box were two unused sun shades
These will be soldered on near the end as they are only 0.005" thick and quite fragile.
Whats next? Well there's a couple of holes in the cab front to be filled where the original horns were fitted, then a couple of slabs of either 0.020" brass or Plasticard (probably brass, as I can then use the extra thickness to hold some rod passed through as staples to hold the roof....if required) to go on the roof as bases for the Winnebago AC units either side of the centre line, outboard of that I'm going to add some small 2 mm tube as bases for the orange beacons, not sure how best to replicate the lens on top, may just use a 1.8 mm LED with the top filed flat to replicate the lens.
This unit does not have AC units but does have horn insect covers, the photo does also show the cab front circular vent cover which I need to add and finally for the cab exterior an arm rest below the side windows and antenna / conduit plus mountings to suit.
I've no idea whether the orange roof beacons are strobes or rotating beacons, guess YouTube will answer that at some point, but looking at the shape and colour density I reckon they are strobes.