OK, I have it, I'm 98% certain it is Engine shed junction Holbeck, this makes sense as Holbeck was a popular spot for photographers.
An aerial shot from today courtesy of Bing.
The photographer is stood where the double circles are at centre and looking toward the bridge also circled, behind that is a fan of tracks for the goods shed/ facility, this was laid to tracks by 1963 and I'm still looking for an earlier picture that showed the structure that existed here. To the left of the photographer is a sub station which accounts for the electrical cable at ground level.
A close view of the bridge reveals the water pipe is still there but slightly re-routed
Note the new brick work behind the tank and up to the bridge abutment, if you take that away your left with an identical bridge abutment arrangement as in your photo as well as the steep drop off the bridge for road traffic. Note also the concrete fence by the car park, if you zoom in and change the angle you can see it still exists. The cars sit on the remains of the buildings in your background but the church is further along and hidden by your train so no idea what the building in the back ground of yours is, again this area was cleared in the early 60s and I'm still trying to find and older image of this area. Both Tracey and Cross photographed around this area and I haven't gone through their books yet.
A shot from the web taken from the bridge.
4F 43987. by
John Whiteley, on Flickr
Note the concrete wall and ground level cables.
Another photo but facing the other way from the coaling tower
4F 44238 passing Holbeck. by
John Whiteley, on Flickr
There will be a photo somewhere from the coaling tower facing the same way as the photographer, it's just a case of finding it.
This shot is interesting as it's looking directly at where the photographer would of stood
Leeds: Holbeck Shed. 1951. by
jsb303, on Flickr
Note the concrete wall looks brand new in this shot and the ground cable installation, the shot is dated as 1951 so that throws some doubt on the buildings in the back ground of your shot unless they are further away than I've mentally placed them.
I'd like just one shot that shows the buildings in the background of your shot, either the larger one and/or it's purpose, or one of the goods shed behind the bridge to be 100% sure, but as for now, I'd go with Leeds Holbeck engine shed Jct.